WebAdd Demuxlet Results to ArchR Project. addDeviationsMatrix () Add a matrix of deviations for a given peakAnnotation to Arrow Files in ArchRProject. addDoubletScores () Add Doublet Scores to a collection of ArrowFiles or an ArchRProject. addFeatureCounts () This function will add total counts of scATAC cells in provided features into ArchRProject. WebJul 5, 2024 · addGeneScoreMatrix ( input = NULL, genes = getGenes (input), geneModel = "exp (-abs (x)/5000) + exp (-1)", matrixName = "GeneScoreMatrix", extendUpstream = c …

scATAC-Seq reveals heterogeneity associated with …

WebaddGeneScoreMatrix (input = NULL, genes = getGenes (input), geneModel = "exp(-abs(x)/5000) + exp(-1)", matrixName = "GeneScoreMatrix", extendUpstream = c (1000, … WebDec 12, 2024 · Spermatogenesis is a complicated and precisely regulated process in which mature spermatozoa are produced inside the seminiferous tubules. Haploid spermatozoa are derived from undifferentiated... canine therapy pools

createArrowFiles: Create Arrow Files in GreenleafLab/ArchR: …

WebCreate a GeneScoreMatrix using the custom geneAnnotation that was defined when we called addArchRGenome (). ArrowFiles <- createArrowFiles( inputFiles = inputFiles, sampleNames = names(inputFiles), filterTSS = 4, #Dont set this too high because you can always increase later filterFrags = 1000, addTileMat = TRUE, addGeneScoreMat = TRUE ) WebApr 5, 2024 · Gene scores were calculated by the addGeneScoreMatrix function with default parameters, and the different gene scores of each cluster were calculated by … WebApr 5, 2024 · does subsetCells() + addTileMatrix() + addGeneScoreMatrix() perform a similar operation as subsetArchRProject() (when dropCells = TRUE,) in that it removes … fivecast abn